Marianne, Rooman: search on Z-Library

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1

Quantification of biases in predictions of protein stability changes upon mutations

Pucci, Fabrizio, Bernaerts, Katrien, Kwasigroch, Jean Marc, Rooman, Marianne

Journal:

Year:

2018

Language:

english

File:

PDF, 562 KB

english, 2018

2

SOLart: a structure-based method to predict protein solubility and aggregation

Hou, Qingzhen, Kwasigroch, Jean-Marc, Rooman, Marianne, Pucci, Fabrizio, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 1010 KB

english, 2019

3

Cation–π/H-bond Stair Motifs at Protein–DNA Interfaces

Marianne Rooman, Jacky Liévin, Eric Buisine, René Wintjens

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 451 KB

english, 2002

4

Design Principles of a Genetic Alarm Clock

Albert, Jaroslav, Rooman, Marianne, Herman, Christophe

Journal:

Year:

2012

Language:

english

File:

PDF, 919 KB

english, 2012

5

What is Paradoxical about Levinthal Paradox?

Rooman, Marianne, Dehouck, Yves, Kwasigroch, Jean Marc, Biot, Christophe, Gilis, Dimitri

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2002

Language:

english

File:

PDF, 241 KB

english, 2002

6

PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality

Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

7

Identification of predictive sequence motifs limited by protein structure data base size

Rooman, Marianne J., Wodak, Shoshana J.

Journal:

Year:

1988

File:

PDF, 750 KB

1988

8

BROMINE IN THE CUTICLE OF POLYSIPHONIA NIGRESCENS: LOCALIZATION AND CONTENT

Marianne E. E. Pedersén, Godfried M. Roomans, Angelica v. Hofsten

Journal:

Journal of Phycology

Year:

1981

File:

PDF, 635 KB

1981

9

Development of Novel Statistical Potentials Describing Cation−π Interactions in Proteins and Comparison with Semiempirical and Quantum Chemistry Approaches

Gilis, Dimitri, Biot, Christophe, Buisine, Eric, Dehouck, Yves, Rooman, Marianne

Journal:

Journal of Chemical Information and Modeling

Year:

2006

Language:

english

File:

PDF, 183 KB

english, 2006

10

Improved insights into protein thermal stability: from the molecular to the structurome scale

Pucci, Fabrizio, Rooman, Marianne

Journal:

Philosophical Transactions Mathematical Physical & Engineering Sciences

Year:

2016

Language:

english

File:

PDF, 633 KB

english, 2016

11

SCooP: an accurate and fast predictor of protein stability curves as a function of temperature

Pucci, Fabrizio, Marc Kwasigroch, Jean, Rooman, Marianne

Journal:

Year:

2017

Language:

english

File:

PDF, 912 KB

english, 2017

12

Localization of Absorbed Cadmium in Fucus vesiculosusL. by X-ray Microanalysis

Lignell, Åke, Roomans, Godfried M., Pedersén, Marianne

Journal:

Zeitschrift für Pflanzenphysiologie

Year:

1982

Language:

english

File:

PDF, 677 KB

english, 1982

13

Probability distributions for multimeric systems

Albert, Jaroslav, Rooman, Marianne

Journal:

Journal of Mathematical Biology

Year:

2016

Language:

english

File:

PDF, 629 KB

english, 2016

14

AIP Conference Proceedings [AIP THEORY AND APPLICATIONS IN COMPUTATIONAL CHEMISTRY: THE FIRST DECADE OF THE SECOND MILLENNIUM: International Congress TACC-2012 - Pavia, Italy (2–7 September 2012)] - Design of modified proteins using knowledge-based approaches

Dehouck, Yves, Gilis, Dimitri, Rooman, Marianne

Year:

2012

Language:

english

File:

PDF, 210 KB

english, 2012

15

Symmetry Principles in Optimization Problems: an application to Protein Stability Prediction★

Pucci, Fabrizio, Bernaerts, Katrien, Teheux, Fabian, Gilis, Dimitri, Rooman, Marianne

Journal:

IFAC-PapersOnLine

Year:

2015

Language:

english

File:

PDF, 406 KB

english, 2015

16

Extracting information on folding from the amino acid sequence: Accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions

Rooman, Marianne J., Kocher, Jean Pierre A., Wodak, Shoshana J.

Journal:

Year:

1992

Language:

english

File:

PDF, 2.24 MB

english, 1992

17

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials

Folch, Benjamin, Rooman, Marianne, Dehouck, Yves

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 194 KB

english, 2008

18

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects

Raimondi, Daniele, Gazzo, Andrea M., Rooman, Marianne, Lenaerts, Tom, Vranken, Wim F.

Journal:

Year:

2016

File:

PDF, 233 KB

2016

19

Rational antibiotic design: in silico structural comparison of the functional cavities of penicillin-binding proteins and ß-lactamases

Mbaye, Mame Ndew, Gilis, Dimitri, Rooman, Marianne

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2017

Language:

english

File:

PDF, 5.78 MB

english, 2017

20

Different derivations of knowledge-based potentials and analysis of their robustness and context-dependent predictive power

Marianne Rooman, Dimitri Gilis

Journal:

Year:

1998

Language:

english

File:

PDF, 257 KB

english, 1998

21

Factors Influencing the Ability of Knowledge-based Potentials to Identify Native Sequence-Structure Matches

Jean-Pierre A. Kocher, Marianne J. Rooman, Shoshana J. Wodak

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 1.01 MB

1994

22

Basis Set and Electron Correlation Effects on ab Initio Calculations of Cation-π/H-Bond Stair Motifs

Wintjens, René, Biot, Christophe, Rooman, Marianne, Liévin, Jacky

Journal:

Journal of Physical Chemistry A

Year:

2003

Language:

english

File:

PDF, 177 KB

english, 2003

23

Insights into noise modulation in oligomerization systems of increasing complexity

Pucci, Fabrizio, Rooman, Marianne

Journal:

Physical Review E

Year:

2018

Language:

english

File:

PDF, 592 KB

english, 2018

24

Ultrastructural Localization of Bromine and Iodine in the Stipes of Laminaria digitata (Huds.) Lamour., Laminaria saccharina (L.) Lamour. and Laminaria hyperborea (Gunn.) Fosl.

Pedersén, Marianne, Roomans, G. M.

Journal:

Botanica Marina

Year:

1983

Language:

english

File:

PDF, 1.41 MB

english, 1983

25

Relation between DNA ionization potentials, single base substitutions and pathogenic variants

Pucci, Fabrizio, Rooman, Marianne

Journal:

Year:

2019

File:

PDF, 1017 KB

2019

26

A modified technique for the impregnation of lanthanum tracer to study the integrity of tight junctions on cells grown on a permeable substrate

Harriet Nilsson, Anca Dragomir, Anders Ahlander, Marianne Ljungkvist, Godfried M. Roomans

Journal:

Microscopy Research and Technique

Year:

2006

Language:

english

File:

PDF, 521 KB

english, 2006

27

Protein structure prediction by threading methods: Evaluation of current techniques

Christian M.-R. Lemer, Marianne J. Rooman, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 2.10 MB

english, 1995

28

Optimality of the genetic code with respect to protein stability and amino-acid frequencies

Dimitri Gilis, Serge Massar, Nicolas J Cerf, Marianne Rooman

Journal:

Year:

2001

Language:

english

File:

PDF, 161 KB

english, 2001

29

Stair Motifs at Protein−DNA Interfaces: Nonadditivity of H-Bond, Stacking, and Cation−π Interactions

Biot, Christophe, Wintjens, René, Rooman, Marianne

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 123 KB

english, 2004

30

Cation-π, amino-π, π-π, and H-bond interactions stabilize antigen-antibody interfaces

Dalkas, Georgios A., Teheux, Fabian, Kwasigroch, Jean Marc, Rooman, Marianne

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 409 KB

english, 2014

31

Prediction and interpretation of deleterious coding variants in terms of protein structural stability

Ancien, François, Pucci, Fabrizio, Godfroid, Maxime, Rooman, Marianne

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.66 MB

english, 2018

32

X-Ray Microanalysis of Planktic Diatoms in in situ Studies of Metal Pollution

Lindahl, G., Wallström, Kerstin, Roomans, G. M., Pedersén, Marianne

Journal:

Botanica Marina

Year:

1983

Language:

english

File:

PDF, 2.63 MB

english, 1983

33

Detection of Developmental and Perturbation Stages from DNA Microarray Time Series and Robust Modeling of Gene Expression Evolution

Haye, Alexandre, Albert, Jaroslav, Dehouck, Yves, Rooman, Marianne

Journal:

IFAC Proceedings Volumes

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

34

Is the Cell Nucleus a Necessary Component in Precise Temporal Patterning?

Albert, Jaroslav, Rooman, Marianne, Isalan, Mark

Journal:

Year:

2015

Language:

english

File:

PDF, 2.00 MB

english, 2015

35

Structural classification of αββ and ββα supersecondary structure units in proteins

Nathalie S. Boutonnet, Andrey V. Kajava, Marianne J. Rooman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 1020 KB

english, 1998

36

Dynamic modeling of gene expression in prokaryotes: application to glucose-lactose diauxie inEscherichia coli

Jaroslav Albert, Marianne Rooman

Journal:

Systems and Synthetic Biology

Year:

2011

Language:

english

File:

PDF, 466 KB

english, 2011

37

Automatic Classification and Analysis of αα-Turn Motifs in Proteins

René T. Wintjens, Marianne J. Rooman, Shoshana J. Wodak

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 2.28 MB

english, 1996

38

Database-Derived Potentials Dependent on Protein Size for In Silico Folding and Design

Dehouck, Yves, Gilis, Dimitri, Rooman, Marianne

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 192 KB

english, 2004

39

Modeling the temporal evolution of the Drosophila gene expression from DNA microarray time series

Haye, Alexandre, Dehouck, Yves, Kwasigroch, Jean Marc, Bogaerts, Philippe, Rooman, Marianne

Journal:

Physical Biology

Year:

2009

Language:

english

File:

PDF, 600 KB

english, 2009

40

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - Identification of protein stability patches that pinpoint key structural or functional sites

Marie, De Laet, Yves, Dehouck, Dimitri, Gilis, Marianne, Rooman

Year:

2012

Language:

english

File:

PDF, 166 KB

english, 2012

41

SODa: An Mn/Fe superoxide dismutase prediction and design server

Jean Marc Kwasigroch, René Wintjens, Dimitri Gilis, Marianne Rooman

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 442 KB

english, 2008

42

eLS || Protein-DNA Interactions

Rooman, Marianne

Year:

2001

Language:

english

File:

PDF, 451 KB

english, 2001

43

Robust non-linear differential equation models of gene expression evolution acrossDrosophiladevelopment

Alexandre Haye, Jaroslav Albert, Marianne Rooman

Journal:

BMC Research Notes

Year:

2012

Language:

english

File:

PDF, 539 KB

english, 2012

44

Conformational Properties of Four Peptides Corresponding to .alpha.-Helical Regions of Rhodospirillum Cytochrome c2 and Bovine Calcium Binding Protein

Pintar, Alessandro, Chollet, Andre, Bradshaw, Charles, Chaffotte, Alain, Cadieux, Celine, Rooman, Marianne J., Hallenga, Klaas, Knowles, Jonathan, Goldberg, Michel, Wodak, Shoshana J.

Journal:

Year:

1994

Language:

english

File:

PDF, 1.72 MB

english, 1994

45

Conformations Consistent with Charge Migration Observed in DNA and RNA X-ray Structures

Rooman, Marianne, Cauët, Emilie, Liévin, Jacques, Wintjens, René

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

46

Are database-derived potentials valid for scoring both forward and inverted protein folding?

Rooman, Marianne J., Wodak, Shoshana J.

Journal:

Protein Engineering Design and Selection

Year:

1995

Language:

english

File:

PDF, 2.46 MB

english, 1995

47

Localization and Quantification of Iodine and Bromine in the Red Alga Phyllophora truncata (Pallas) A. D. Zinova by Electron Microscopy and X-Ray Microanalysis

Westlund, P., Roomans, G. M., Pedersén, Marianne

Journal:

Botanica Marina

Year:

1981

Language:

english

File:

PDF, 682 KB

english, 1981

48

Large-scale in silico mutagenesis experiments reveal optimization of genetic code and codon usage for protein mutational robustness

Schwersensky, Martin, Rooman, Marianne, Pucci, Fabrizio

Journal:

Year:

2020

File:

PDF, 1.80 MB

2020

49

Modeling the Molecular Impact of SARS-CoV-2 Infection on the Renin-Angiotensin System

Pucci, Fabrizio, Bogaerts, Philippe, Rooman, Marianne

Journal:

Year:

2020

File:

PDF, 1.95 MB

2020

50

Identification of Short Turn Motifs in Proteins Using Sequence and Structure Fingerprints

Wintjens, René T., Rooman, Marianne J., Wodak, Shoshana J.

Journal:

Israel Journal of Chemistry

Year:

1994

Language:

english

File:

PDF, 1.50 MB

english, 1994

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